STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4E506_BRARPC3H1-type domain-containing protein. (400 aa)    
Predicted Functional Partners:
M4C8U3_BRARP
Uncharacterized protein.
  
     0.480
M4DBG4_BRARP
Uncharacterized protein.
  
     0.478
M4CDT9_BRARP
Uncharacterized protein.
  
     0.474
M4DRS0_BRARP
Uncharacterized protein.
  
     0.471
M4DKN1_BRARP
zf-C3H1 domain-containing protein.
  
     0.465
M4CZB6_BRARP
Uncharacterized protein.
  
     0.456
M4DI45_BRARP
TPX2 domain-containing protein.
  
     0.445
M4CCP3_BRARP
Uncharacterized protein.
  
     0.444
M4DHM2_BRARP
Uncharacterized protein.
  
     0.444
M4C789_BRARP
Uncharacterized protein.
  
     0.442
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.