STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4E558_BRARPUncharacterized protein. (316 aa)    
Predicted Functional Partners:
M4C8U9_BRARP
Uncharacterized protein.
    
 
 0.950
M4DNG0_BRARP
Uncharacterized protein.
    
 
 0.950
M4CH56_BRARP
J domain-containing protein.
   
 
 0.933
M4CWA4_BRARP
Uncharacterized protein.
   
 
 0.933
M4EML6_BRARP
Uncharacterized protein.
   
 
 0.933
M4FAB5_BRARP
SEC63 domain-containing protein.
   
 
 0.933
M4EU21_BRARP
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 
 0.848
M4CH22_BRARP
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 
 0.842
M4DZF1_BRARP
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 
 0.842
M4E2G8_BRARP
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 
 0.842
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.