STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4EJC6_BRARPUncharacterized protein. (261 aa)    
Predicted Functional Partners:
M4E903_BRARP
Uncharacterized protein.
     
 0.586
M4DQR8_BRARP
Uncharacterized protein.
      
 0.574
M4EH61_BRARP
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.574
M4F5Q6_BRARP
HTH myb-type domain-containing protein.
  
 
 0.570
M4FGB6_BRARP
TPR_REGION domain-containing protein.
      
 0.566
M4E2A5_BRARP
Uncharacterized protein.
     
 0.543
M4DH86_BRARP
CRAL-TRIO domain-containing protein.
      
 0.520
M4F2U9_BRARP
Uncharacterized protein.
      
 0.520
M4FEP3_BRARP
VQ domain-containing protein.
      
 0.520
M4DTH4_BRARP
RING-type domain-containing protein.
      
 0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.