STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4ERL1_BRARPFBD domain-containing protein. (397 aa)    
Predicted Functional Partners:
M4E6Q4_BRARP
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.544
M4EL00_BRARP
ERCC4 domain-containing protein.
    
 0.536
M4DK66_BRARP
Uncharacterized protein.
    
 0.517
M4FCN6_BRARP
DNA_pol_E_B domain-containing protein.
    
 0.517
M4CLC0_BRARP
Uncharacterized protein.
  
     0.505
M4CE78_BRARP
TF-B3 domain-containing protein.
  
     0.502
M4CAE9_BRARP
Uncharacterized protein.
  
     0.492
M4EP83_BRARP
Uncharacterized protein.
  
  0.489
M4EK27_BRARP
F-box domain-containing protein.
  
     0.488
M4DCF7_BRARP
Protein kinase domain-containing protein.
   
 0.487
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.