STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4EZ81_BRARPWD_REPEATS_REGION domain-containing protein. (536 aa)    
Predicted Functional Partners:
M4D1N2_BRARP
Uncharacterized protein.
   
 0.999
M4DQ87_BRARP
Uncharacterized protein.
   
 0.999
M4FB61_BRARP
Uncharacterized protein.
   
 0.999
M4C7Y9_BRARP
Sas10 domain-containing protein.
   
 0.998
M4CAH4_BRARP
BP28CT domain-containing protein.
   
 0.998
M4CCV5_BRARP
CBF domain-containing protein.
   
 0.998
M4CNB4_BRARP
KH_8 domain-containing protein.
   
 0.998
M4CNU3_BRARP
WD_REPEATS_REGION domain-containing protein.
   
 0.998
M4CTI5_BRARP
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.998
M4CX36_BRARP
WD_REPEATS_REGION domain-containing protein.
   
 0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.