M4F0I5_BRARP protein (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M4F0I5_BRARP

Uncharacterized protein. (756 aa)

Predicted Functional Partners:

M4CG15_BRARP

0.965

M4CS21_BRARP

0.965

M4CLW1_BRARP

0.963

M4C810_BRARP

0.930

M4F9A8_BRARP

0.930

M4D9H7_BRARP

0.902

M4D4Q7_BRARP

0.900

M4CPI6_BRARP

0.704

M4CXI4_BRARP

0.704

M4DAB5_BRARP

0.598

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C810_BRARP	M4CG15_BRARP	M4C810	M4CG15	Uncharacterized protein.	Uncharacterized protein.	0.468
M4C810_BRARP	M4CLW1_BRARP	M4C810	M4CLW1	Uncharacterized protein.	Uncharacterized protein.	0.468
M4C810_BRARP	M4CPI6_BRARP	M4C810	M4CPI6	Uncharacterized protein.	Uncharacterized protein.	0.487
M4C810_BRARP	M4CS21_BRARP	M4C810	M4CS21	Uncharacterized protein.	Uncharacterized protein.	0.468
M4C810_BRARP	M4CXI4_BRARP	M4C810	M4CXI4	Uncharacterized protein.	Uncharacterized protein.	0.487
M4C810_BRARP	M4D4Q7_BRARP	M4C810	M4D4Q7	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.930
M4C810_BRARP	M4D9H7_BRARP	M4C810	M4D9H7	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.930
M4C810_BRARP	M4F0I5_BRARP	M4C810	M4F0I5	Uncharacterized protein.	Uncharacterized protein.	0.930
M4C810_BRARP	M4F9A8_BRARP	M4C810	M4F9A8	Uncharacterized protein.	Uncharacterized protein.	0.900
M4CG15_BRARP	M4C810_BRARP	M4CG15	M4C810	Uncharacterized protein.	Uncharacterized protein.	0.468
M4CG15_BRARP	M4CLW1_BRARP	M4CG15	M4CLW1	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CG15_BRARP	M4CPI6_BRARP	M4CG15	M4CPI6	Uncharacterized protein.	Uncharacterized protein.	0.982
M4CG15_BRARP	M4CS21_BRARP	M4CG15	M4CS21	Uncharacterized protein.	Uncharacterized protein.	0.900
M4CG15_BRARP	M4CXI4_BRARP	M4CG15	M4CXI4	Uncharacterized protein.	Uncharacterized protein.	0.982
M4CG15_BRARP	M4D4Q7_BRARP	M4CG15	M4D4Q7	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.965
M4CG15_BRARP	M4D9H7_BRARP	M4CG15	M4D9H7	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.945
M4CG15_BRARP	M4DAB5_BRARP	M4CG15	M4DAB5	Uncharacterized protein.	Uncharacterized protein.	0.495
M4CG15_BRARP	M4F0I5_BRARP	M4CG15	M4F0I5	Uncharacterized protein.	Uncharacterized protein.	0.965
M4CG15_BRARP	M4F9A8_BRARP	M4CG15	M4F9A8	Uncharacterized protein.	Uncharacterized protein.	0.468
M4CLW1_BRARP	M4C810_BRARP	M4CLW1	M4C810	Uncharacterized protein.	Uncharacterized protein.	0.468

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About