STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4F713_BRARPLRRNT_2 domain-containing protein. (834 aa)    
Predicted Functional Partners:
M4EDT4_BRARP
Uncharacterized protein.
  
     0.504
M4EIR5_BRARP
Uncharacterized protein.
  
     0.497
M4DK76_BRARP
LRRNT_2 domain-containing protein.
  
 
  0.495
M4CP22_BRARP
Uncharacterized protein.
  
     0.494
M4FCN8_BRARP
Uncharacterized protein.
  
     0.484
M4F8N8_BRARP
Uncharacterized protein.
  
     0.481
M4E5R5_BRARP
Uncharacterized protein.
  
     0.474
M4DYL0_BRARP
Ubiquitin-like domain-containing protein.
  
     0.432
M4E6Q4_BRARP
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.431
M4D1Z6_BRARP
TIR domain-containing protein.
  
 
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.