STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4FBF5_BRARPUncharacterized protein. (124 aa)    
Predicted Functional Partners:
M4DQS4_BRARP
OTU domain-containing protein.
    
 0.750
M4CH36_BRARP
Uncharacterized protein.
    
 0.735
M4FH41_BRARP
MPN domain-containing protein.
    
 0.735
M4CMP5_BRARP
PRKCSH domain-containing protein.
    
 0.720
M4CG98_BRARP
TPR_REGION domain-containing protein.
    
 0.636
M4CSN2_BRARP
TPR_REGION domain-containing protein.
    
 0.636
M4DDY6_BRARP
TPR_REGION domain-containing protein.
    
 0.636
M4CS57_BRARP
Josephin domain-containing protein.
   
 0.611
M4DEB8_BRARP
Reticulon-like protein.
   
 0.611
M4D0X5_BRARP
Pex14_N domain-containing protein.
    
 0.603
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.