STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M4FFC9_BRARPFBD domain-containing protein. (435 aa)    
Predicted Functional Partners:
M4CUM7_BRARP
PMEI domain-containing protein.
      
 0.570
M4EJU5_BRARP
FBD domain-containing protein.
  
   
 0.513
M4DLR5_BRARP
Bet_v_1 domain-containing protein.
  
     0.511
M4EJU4_BRARP
FBD domain-containing protein.
  
   
 0.503
M4C8E2_BRARP
F-box domain-containing protein.
  
 
   0.485
M4EPD9_BRARP
Uncharacterized protein.
  
    0.481
M4EK10_BRARP
Uncharacterized protein.
  
     0.476
M4E337_BRARP
Uncharacterized protein.
  
     0.470
M4D197_BRARP
Myb-like domain-containing protein.
  
   0.469
M4DG93_BRARP
Uncharacterized protein.
  
    0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.