STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPI-3Cysteine proteinase inhibitor; Belongs to the cystatin family. Phytocystatin subfamily. (101 aa)    
Predicted Functional Partners:
M4DTY9_BRARP
Uncharacterized protein; Belongs to the peptidase C1 family.
      
 0.542
M4E4Y0_BRARP
Ubiquitin-like domain-containing protein.
   
  
 0.510
M4CN37_BRARP
Cystatin domain-containing protein.
  
   
 0.498
M4CP29_BRARP
TCP domain-containing protein.
  
     0.473
M4F7R7_BRARP
BHLH domain-containing protein.
  
     0.472
M4E9C2_BRARP
AAI domain-containing protein.
      
 0.469
M4EK13_BRARP
Uncharacterized protein.
  
     0.462
M4CHF4_BRARP
ALOG domain-containing protein.
  
     0.459
M4DMG8_BRARP
Protein kinase domain-containing protein.
  
     0.456
M4FFP3_BRARP
Uncharacterized protein.
  
     0.439
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.