STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_00946WGS project CABT00000000 data, contig 2.2; Belongs to the helicase family. Dicer subfamily. (1586 aa)    
Predicted Functional Partners:
SMAC_08605
WGS project CABT00000000 data, contig 2.60.
   
 0.971
SMAC_03832
WGS project CABT00000000 data, contig 2.16.
   
 0.968
SMAC_02672
WGS project CABT00000000 data, contig 2.11; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.800
SMAC_02710
WGS project CABT00000000 data, contig 2.11; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.771
SMAC_02078
WGS project CABT00000000 data, contig 2.18.
   
 
 0.771
SMAC_02212
WGS project CABT00000000 data, contig 2.23.
  
 
 0.767
SMAC_01994
WGS project CABT00000000 data, contig 2.5.
   
 
 0.766
SMAC_12768
WGS project CABT00000000 data, contig 2.33.
   
 
 0.756
SMAC_07251
WGS project CABT00000000 data, contig 2.42.
  
   0.755
SMAC_08494
WGS project CABT00000000 data, contig 2.54.
  
 
 0.745
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.