STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y7J5_CIOSAAA_TRNA_LIGASE_II_ALA domain-containing protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. (972 aa)    
Predicted Functional Partners:
H2Y7X5_CIOSA
Uncharacterized protein.
   
 0.974
H2Z5N8_CIOSA
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.972
H2ZEA6_CIOSA
APC2 domain-containing protein.
    
 0.972
H2YD25_CIOSA
Uncharacterized protein.
   
 0.953
H2Z6K1_CIOSA
Uncharacterized protein.
  
 
 0.946
H2YLL5_CIOSA
Tyrosine--tRNA ligase.
  
 
 0.935
H2ZE05_CIOSA
HORMA domain-containing protein.
    
 0.903
H2Y6H6_CIOSA
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.896
H2Y738_CIOSA
WD_REPEATS_REGION domain-containing protein.
    
 0.892
H2YUG4_CIOSA
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
    
 0.870
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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