STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y7K1_CIOSAHomeobox domain-containing protein. (416 aa)    
Predicted Functional Partners:
H2Y5I6_CIOSA
LID domain-containing protein.
    
 0.762
H2ZKT1_CIOSA
Homeobox domain-containing protein.
    
 
0.725
H2ZQS3_CIOSA
BHLH domain-containing protein.
    
 0.676
H2YXA0_CIOSA
BHLH domain-containing protein.
  
 
 0.628
H2Z8S8_CIOSA
Uncharacterized protein.
    
 0.611
H2Z9I6_CIOSA
Uncharacterized protein.
    
 0.611
H2ZB74_CIOSA
MADS-box domain-containing protein.
    
 0.592
H2YK48_CIOSA
BHLH domain-containing protein.
    
 0.565
H2Y6W5_CIOSA
Uncharacterized protein.
    
0.556
H2ZDP9_CIOSA
BHLH domain-containing protein.
    
 0.554
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.