Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2Y7Y5_CIOSAFormyl_trans_N domain-containing protein. (132 aa)    
Predicted Functional Partners:
H2ZF65_CIOSA
ATP-grasp domain-containing protein.
    
 0.970
H2Z0I1_CIOSA
Uncharacterized protein.
    
 0.954
H2YLL5_CIOSA
Tyrosine--tRNA ligase.
  
 
 0.938
H2Z6A3_CIOSA
MGS domain-containing protein.
    
 0.914
H2YYM2_CIOSA
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.902
H2ZQC7_CIOSA
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.885
H2YPW9_CIOSA
10-formyltetrahydrofolate dehydrogenase; In the C-terminal section; belongs to the aldehyde dehydrogenase family. ALDH1L subfamily.
     
 0.874
H2ZCP5_CIOSA
GIDA_assoc domain-containing protein.
  
  
 0.829
H2ZEC1_CIOSA
Tr-type G domain-containing protein.
      
 0.821
H2Z1V6_CIOSA
Glyco_trans_2-like domain-containing protein.
  
 
 0.817
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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