STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y7Z7_CIOSAPalmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (323 aa)    
Predicted Functional Partners:
H2Z9C6_CIOSA
Uncharacterized protein.
   
 
 0.616
H2Z050_CIOSA
Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.
    
 
 0.612
H2ZHZ6_CIOSA
HRDC domain-containing protein.
    
 
 0.545
H2Y692_CIOSA
Uncharacterized protein.
   
 
 0.533
H2ZC08_CIOSA
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
    
 
 0.532
H2YBZ9_CIOSA
Uncharacterized protein.
   
   0.531
H2ZRB5_CIOSA
Uncharacterized protein.
    
   0.520
H2ZJT3_CIOSA
Uncharacterized protein.
   
   0.433
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.