Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2Y8A6_CIOSACalreticulin. (420 aa)    
Predicted Functional Partners:
H2ZL52_CIOSA
HATPase_c domain-containing protein.
   
 0.998
H2YJI4_CIOSA
Protein disulfide-isomerase.
   
 0.996
H2ZN96_CIOSA
Protein disulfide-isomerase.
   
 0.992
H2ZFG1_CIOSA
Uncharacterized protein.
   
 0.975
H2Z065_CIOSA
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.968
H2Z7S7_CIOSA
Uncharacterized protein.
   
 0.968
H2ZE70_CIOSA
Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.
   
 0.958
H2YJQ0_CIOSA
Uncharacterized protein.
   
 0.951
H2ZM63_CIOSA
Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.
   
 0.950
H2ZM66_CIOSA
Uncharacterized protein.
   
 0.950
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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