STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Y8T4_CIOSATLC domain-containing protein. (252 aa)    
Predicted Functional Partners:
H2YTD8_CIOSA
Uncharacterized protein.
    
 
 0.506
H2Z0E2_CIOSA
Uncharacterized protein.
    
 
 0.497
H2YFN8_CIOSA
Guanylate kinase-like domain-containing protein.
    
 
 0.465
H2Z575_CIOSA
Uncharacterized protein.
    
 
 0.461
H2YA28_CIOSA
Uncharacterized protein.
    
   0.454
H2ZAS8_CIOSA
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.454
H2ZIQ9_CIOSA
Uncharacterized protein.
   
 
 0.439
H2Y8D7_CIOSA
Uncharacterized protein.
    
 
 0.422
H2YIF9_CIOSA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.422
H2YN44_CIOSA
Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.
   
 
  0.415
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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