STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2Y8X6_CIOSAL-type lectin-like domain-containing protein. (257 aa)    
Predicted Functional Partners:
H2YQ38_CIOSA
GOLD domain-containing protein.
   
 0.898
H2ZF49_CIOSA
GOLD domain-containing protein; Belongs to the EMP24/GP25L family.
   
 0.879
H2ZP45_CIOSA
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.854
H2ZJN5_CIOSA
Uncharacterized protein.
   
  
 0.744
H2Z7P6_CIOSA
MABP domain-containing protein.
      
 0.743
H2ZD36_CIOSA
Uncharacterized protein.
    
 0.729
H2YAR6_CIOSA
Uncharacterized protein.
     
 0.727
H2Y9Z0_CIOSA
t-SNARE coiled-coil homology domain-containing protein.
   
 
 0.711
H2YAR1_CIOSA
UBIQUITIN_CONJUGAT_2 domain-containing protein.
      
 0.707
H2ZKR6_CIOSA
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 
 0.706
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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