Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2Y9K2_CIOSAUncharacterized protein. (612 aa)    
Predicted Functional Partners:
H2YVK2_CIOSA
Uncharacterized protein.
    
 0.988
H2Z6X0_CIOSA
MPN domain-containing protein.
    
 
 0.965
H2Z162_CIOSA
Uncharacterized protein.
    
  0.963
H2YDS1_CIOSA
G-patch domain-containing protein.
   
 0.960
H2ZM96_CIOSA
Uncharacterized protein.
    
0.959
H2Z5J0_CIOSA
DBR1 domain-containing protein.
   
 
 0.943
H2ZDA8_CIOSA
Uncharacterized protein.
   
 
 0.917
H2YEX6_CIOSA
OB_NTP_bind domain-containing protein.
   
 
 0.904
H2Z5A5_CIOSA
Sm domain-containing protein.
    
 
 0.900
H2YDK8_CIOSA
WD_REPEATS_REGION domain-containing protein.
   
 
 0.897
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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