STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YA92_CIOSAUncharacterized protein. (151 aa)    
Predicted Functional Partners:
H2Y421_CIOSA
Transcription elongation factor SPT5.
   
 0.822
H2Y4I7_CIOSA
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.819
H2YEA9_CIOSA
RPOLD domain-containing protein.
    
 0.808
H2YGP8_CIOSA
S1 motif domain-containing protein.
    
 0.808
H2YYA0_CIOSA
Uncharacterized protein.
    
 0.808
H2YYP3_CIOSA
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.808
H2Z2N0_CIOSA
RNA_pol_L_2 domain-containing protein.
    
 0.808
H2Z3H0_CIOSA
RNA_pol_Rpb5_C domain-containing protein.
    
 0.808
H2Z9J0_CIOSA
RPOL4c domain-containing protein.
    
 0.808
H2ZED2_CIOSA
Uncharacterized protein.
    
 0.808
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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