STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YJH2_CIOSACW-type domain-containing protein. (136 aa)    
Predicted Functional Partners:
H2Y4Q9_CIOSA
Tudor domain-containing protein.
   
 
 0.953
H2YMC7_CIOSA
PWWP domain-containing protein.
    
 
 0.942
H2YMD2_CIOSA
Uncharacterized protein.
    
 
 0.942
H2YQ30_CIOSA
Uncharacterized protein.
    
 0.807
H2YUW5_CIOSA
Hist_deacetyl domain-containing protein.
   
 0.792
H2ZGM4_CIOSA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.792
H2ZKV0_CIOSA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.792
H2YMD8_CIOSA
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
    
 0.780
H2Z1R8_CIOSA
Ubiquitin carboxyl-terminal hydrolase.
    
 0.780
H2Z087_CIOSA
WD_REPEATS_REGION domain-containing protein.
    
 0.766
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.