STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YKM5_CIOSAUncharacterized protein. (190 aa)    
Predicted Functional Partners:
H2Y9Y5_CIOSA
Eukaryotic translation initiation factor 3 subunit B.
   
 
 0.700
H2Y9Y7_CIOSA
eIF2A domain-containing protein.
   
 
 0.700
H2ZAS5_CIOSA
5'-3' exoribonuclease 1.
    
 
 0.560
H2YN58_CIOSA
Uncharacterized protein.
   
 
 0.514
H2Z6J2_CIOSA
Protein kinase domain-containing protein.
   
 
 0.514
H2YM13_CIOSA
Tr-type G domain-containing protein.
   
 
 0.482
H2ZJ60_CIOSA
Uncharacterized protein.
   
 
 0.480
H2Z2Q9_CIOSA
RIO domain-containing protein.
   
   0.474
H2Z8K6_CIOSA
Uncharacterized protein.
    
 
 0.469
H2Y732_CIOSA
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.424
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.