H2YL28_CIOSA protein (Ciona savignyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2YL28_CIOSA

ACOX domain-containing protein. (317 aa)

Predicted Functional Partners:

H2ZL63_CIOSA

0.953

H2ZML8_CIOSA

0.953

H2ZII1_CIOSA

0.951

H2YL24_CIOSA

0.947

H2YAR8_CIOSA

0.942

H2YAS2_CIOSA

0.942

H2YZ77_CIOSA

0.911

H2ZQC4_CIOSA

0.887

H2Z506_CIOSA

0.885

H2ZAK0_CIOSA

0.882

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2YAR8_CIOSA	H2YAS2_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000002420	Uncharacterized protein.	ACB domain-containing protein.	0.858
H2YAR8_CIOSA	H2YL28_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000006030	Uncharacterized protein.	ACOX domain-containing protein.	0.942
H2YAR8_CIOSA	H2YZ77_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000010639	Uncharacterized protein.	SCP2 domain-containing protein.	0.955
H2YAR8_CIOSA	H2Z506_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000012668	Uncharacterized protein.	Uncharacterized protein.	0.902
H2YAR8_CIOSA	H2ZAK0_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000014615	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.993
H2YAR8_CIOSA	H2ZII1_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000017397	Uncharacterized protein.	Acyl-CoA_dh_M domain-containing protein.	0.942
H2YAR8_CIOSA	H2ZL63_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000018329	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.994
H2YAR8_CIOSA	H2ZML8_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000018834	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.994
H2YAR8_CIOSA	H2ZQC4_CIOSA	ENSCSAVP00000002416	ENSCSAVP00000019790	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.540
H2YAS2_CIOSA	H2YAR8_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000002416	ACB domain-containing protein.	Uncharacterized protein.	0.858
H2YAS2_CIOSA	H2YL28_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000006030	ACB domain-containing protein.	ACOX domain-containing protein.	0.942
H2YAS2_CIOSA	H2YZ77_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000010639	ACB domain-containing protein.	SCP2 domain-containing protein.	0.955
H2YAS2_CIOSA	H2Z506_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000012668	ACB domain-containing protein.	Uncharacterized protein.	0.902
H2YAS2_CIOSA	H2ZAK0_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000014615	ACB domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.993
H2YAS2_CIOSA	H2ZII1_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000017397	ACB domain-containing protein.	Acyl-CoA_dh_M domain-containing protein.	0.942
H2YAS2_CIOSA	H2ZL63_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000018329	ACB domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.994
H2YAS2_CIOSA	H2ZML8_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000018834	ACB domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.994
H2YAS2_CIOSA	H2ZQC4_CIOSA	ENSCSAVP00000002420	ENSCSAVP00000019790	ACB domain-containing protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.556
H2YL24_CIOSA	H2YL28_CIOSA	ENSCSAVP00000006026	ENSCSAVP00000006030	Uncharacterized protein.	ACOX domain-containing protein.	0.947
H2YL28_CIOSA	H2YAR8_CIOSA	ENSCSAVP00000006030	ENSCSAVP00000002416	ACOX domain-containing protein.	Uncharacterized protein.	0.942