H2YQ19_CIOSA protein (Ciona savignyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2YQ19_CIOSA

CN hydrolase domain-containing protein. (281 aa)

Predicted Functional Partners:

H2YWE8_CIOSA

0.943

H2Y8I4_CIOSA

0.906

H2Y4S3_CIOSA

0.887

H2YBQ7_CIOSA

0.887

H2YDW8_CIOSA

0.887

H2YFQ0_CIOSA

0.887

H2ZAC7_CIOSA

0.887

H2ZE87_CIOSA

0.887

H2Z6A0_CIOSA

0.881

H2ZG12_CIOSA

0.867

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y4S3_CIOSA	H2YQ19_CIOSA	ENSCSAVP00000000321	ENSCSAVP00000007427	Nudix hydrolase domain-containing protein.	CN hydrolase domain-containing protein.	0.887
H2Y4S3_CIOSA	H2YWE8_CIOSA	ENSCSAVP00000000321	ENSCSAVP00000009659	Nudix hydrolase domain-containing protein.	HIT domain-containing protein.	0.496
H2Y4S3_CIOSA	H2Z6A0_CIOSA	ENSCSAVP00000000321	ENSCSAVP00000013112	Nudix hydrolase domain-containing protein.	Nudix hydrolase domain-containing protein.	0.895
H2Y8I4_CIOSA	H2YQ19_CIOSA	ENSCSAVP00000001632	ENSCSAVP00000007427	NADPH:adrenodoxin oxidoreductase, mitochondrial.	CN hydrolase domain-containing protein.	0.906
H2Y8I4_CIOSA	H2YWE8_CIOSA	ENSCSAVP00000001632	ENSCSAVP00000009659	NADPH:adrenodoxin oxidoreductase, mitochondrial.	HIT domain-containing protein.	0.524
H2YBQ7_CIOSA	H2YQ19_CIOSA	ENSCSAVP00000002755	ENSCSAVP00000007427	Uncharacterized protein.	CN hydrolase domain-containing protein.	0.887
H2YBQ7_CIOSA	H2YWE8_CIOSA	ENSCSAVP00000002755	ENSCSAVP00000009659	Uncharacterized protein.	HIT domain-containing protein.	0.496
H2YBQ7_CIOSA	H2Z6A0_CIOSA	ENSCSAVP00000002755	ENSCSAVP00000013112	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.934
H2YBQ7_CIOSA	H2ZE87_CIOSA	ENSCSAVP00000002755	ENSCSAVP00000015903	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.449
H2YDW8_CIOSA	H2YQ19_CIOSA	ENSCSAVP00000003516	ENSCSAVP00000007427	Nudix hydrolase domain-containing protein.	CN hydrolase domain-containing protein.	0.887
H2YDW8_CIOSA	H2YWE8_CIOSA	ENSCSAVP00000003516	ENSCSAVP00000009659	Nudix hydrolase domain-containing protein.	HIT domain-containing protein.	0.496
H2YDW8_CIOSA	H2Z6A0_CIOSA	ENSCSAVP00000003516	ENSCSAVP00000013112	Nudix hydrolase domain-containing protein.	Nudix hydrolase domain-containing protein.	0.895
H2YFQ0_CIOSA	H2YQ19_CIOSA	ENSCSAVP00000004148	ENSCSAVP00000007427	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	CN hydrolase domain-containing protein.	0.887
H2YFQ0_CIOSA	H2YWE8_CIOSA	ENSCSAVP00000004148	ENSCSAVP00000009659	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	HIT domain-containing protein.	0.527
H2YFQ0_CIOSA	H2Z6A0_CIOSA	ENSCSAVP00000004148	ENSCSAVP00000013112	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	Nudix hydrolase domain-containing protein.	0.933
H2YFQ0_CIOSA	H2ZE87_CIOSA	ENSCSAVP00000004148	ENSCSAVP00000015903	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	Nudix hydrolase domain-containing protein.	0.457
H2YQ19_CIOSA	H2Y4S3_CIOSA	ENSCSAVP00000007427	ENSCSAVP00000000321	CN hydrolase domain-containing protein.	Nudix hydrolase domain-containing protein.	0.887
H2YQ19_CIOSA	H2Y8I4_CIOSA	ENSCSAVP00000007427	ENSCSAVP00000001632	CN hydrolase domain-containing protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.906
H2YQ19_CIOSA	H2YBQ7_CIOSA	ENSCSAVP00000007427	ENSCSAVP00000002755	CN hydrolase domain-containing protein.	Uncharacterized protein.	0.887
H2YQ19_CIOSA	H2YDW8_CIOSA	ENSCSAVP00000007427	ENSCSAVP00000003516	CN hydrolase domain-containing protein.	Nudix hydrolase domain-containing protein.	0.887