STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YVZ1_CIOSAENT domain-containing protein. (192 aa)    
Predicted Functional Partners:
H2YZP5_CIOSA
HDAC_interact domain-containing protein.
    
 
 0.805
H2Y690_CIOSA
Chromo domain-containing protein.
    
 
 0.797
H2Z3E1_CIOSA
Uncharacterized protein.
   
 
 0.656
H2Z3F0_CIOSA
PHD-type domain-containing protein.
   
 
 0.656
H2Z6B5_CIOSA
Chromo domain-containing protein.
    
 
 0.610
H2Z6B9_CIOSA
ANK_REP_REGION domain-containing protein.
    
 
 0.610
H2ZBT9_CIOSA
MRG domain-containing protein.
   
 
 0.607
H2ZJ51_CIOSA
MRG domain-containing protein.
   
 
 0.607
H2YC62_CIOSA
Uncharacterized protein.
   
 
 0.592
H2Y4Q9_CIOSA
Tudor domain-containing protein.
   
 
 0.577
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.