STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YXJ9_CIOSAUncharacterized protein. (153 aa)    
Predicted Functional Partners:
H2ZMC4_CIOSA
CNDH2_C domain-containing protein.
   
 0.993
H2ZBN6_CIOSA
Uncharacterized protein.
   
 0.992
H2YJF6_CIOSA
Structural maintenance of chromosomes protein.
   
 0.988
H2Z794_CIOSA
Structural maintenance of chromosomes protein.
   
 0.972
H2YDB2_CIOSA
SMC_N domain-containing protein.
   
 0.885
H2YUZ0_CIOSA
Uncharacterized protein.
   
 0.831
H2YW10_CIOSA
Structural maintenance of chromosomes protein.
   
 0.831
H2YJE8_CIOSA
Uncharacterized protein.
   
 
 0.788
H2YMF3_CIOSA
Uncharacterized protein.
   
 0.758
H2Y8V4_CIOSA
Serine/threonine-protein kinase PLK.
   
 0.727
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.