H2YXK3_CIOSA protein (Ciona savignyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2YXK3_CIOSA

Uncharacterized protein. (570 aa)

Predicted Functional Partners:

H2YXN3_CIOSA

0.933

H2Z575_CIOSA

0.557

H2YFN8_CIOSA

0.498

H2YTD8_CIOSA

0.481

H2YA28_CIOSA

0.471

H2Z0E2_CIOSA

0.471

H2ZAS8_CIOSA

0.471

H2ZA84_CIOSA

0.469

H2YP73_CIOSA

0.466

H2Y8D7_CIOSA

0.431

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y8D7_CIOSA	H2YA28_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000002176	Uncharacterized protein.	Uncharacterized protein.	0.542
H2Y8D7_CIOSA	H2YFN8_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000004136	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.530
H2Y8D7_CIOSA	H2YTD8_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000008598	Uncharacterized protein.	Uncharacterized protein.	0.514
H2Y8D7_CIOSA	H2YXK3_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000010064	Uncharacterized protein.	Uncharacterized protein.	0.431
H2Y8D7_CIOSA	H2YXN3_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000010094	Uncharacterized protein.	ASH domain-containing protein.	0.431
H2Y8D7_CIOSA	H2Z0E2_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000011054	Uncharacterized protein.	Uncharacterized protein.	0.505
H2Y8D7_CIOSA	H2Z575_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000012737	Uncharacterized protein.	Uncharacterized protein.	0.495
H2Y8D7_CIOSA	H2ZAS8_CIOSA	ENSCSAVP00000001585	ENSCSAVP00000014693	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.518
H2YA28_CIOSA	H2Y8D7_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000001585	Uncharacterized protein.	Uncharacterized protein.	0.542
H2YA28_CIOSA	H2YFN8_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000004136	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.580
H2YA28_CIOSA	H2YTD8_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000008598	Uncharacterized protein.	Uncharacterized protein.	0.541
H2YA28_CIOSA	H2YXK3_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000010064	Uncharacterized protein.	Uncharacterized protein.	0.471
H2YA28_CIOSA	H2YXN3_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000010094	Uncharacterized protein.	ASH domain-containing protein.	0.471
H2YA28_CIOSA	H2Z0E2_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000011054	Uncharacterized protein.	Uncharacterized protein.	0.541
H2YA28_CIOSA	H2Z575_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000012737	Uncharacterized protein.	Uncharacterized protein.	0.541
H2YA28_CIOSA	H2ZAS8_CIOSA	ENSCSAVP00000002176	ENSCSAVP00000014693	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.543
H2YFN8_CIOSA	H2Y8D7_CIOSA	ENSCSAVP00000004136	ENSCSAVP00000001585	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.530
H2YFN8_CIOSA	H2YA28_CIOSA	ENSCSAVP00000004136	ENSCSAVP00000002176	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.580
H2YFN8_CIOSA	H2YTD8_CIOSA	ENSCSAVP00000004136	ENSCSAVP00000008598	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.577
H2YFN8_CIOSA	H2YXK3_CIOSA	ENSCSAVP00000004136	ENSCSAVP00000010064	Guanylate kinase-like domain-containing protein.	Uncharacterized protein.	0.498