STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YXL3_CIOSAVacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (183 aa)    
Predicted Functional Partners:
H2ZLG3_CIOSA
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.999
H2ZQK0_CIOSA
Uncharacterized protein.
   
 0.998
H2Y4W3_CIOSA
PX domain-containing protein.
   
 0.986
H2Z5C4_CIOSA
Rab-GAP TBC domain-containing protein.
    
 
 0.973
H2ZNJ0_CIOSA
PX domain-containing protein.
   
 0.932
H2Z6T7_CIOSA
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
  
  
 0.918
H2YI55_CIOSA
Uncharacterized protein.
    
 
 0.852
H2YPB7_CIOSA
Uncharacterized protein.
   
 
 0.852
H2ZDV3_CIOSA
Uncharacterized protein.
    
 
 0.826
H2YB12_CIOSA
PX domain-containing protein.
    
 0.815
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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