H2YXN0_CIOSA protein (Ciona savignyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H2YXN0_CIOSA

Uncharacterized protein. (142 aa)

Predicted Functional Partners:

H2Y4S7_CIOSA

0.836

H2YIF7_CIOSA

0.829

H2ZJ84_CIOSA

0.826

COX2

0.798

COX3

0.793

H2ZG43_CIOSA

0.780

H2YUV6_CIOSA

0.766

H2ZIF2_CIOSA

0.752

H2YC00_CIOSA

0.659

H2YC01_CIOSA

0.659

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX2	COX3	ENSCSAVP00000020156	ENSCSAVP00000020160	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.999
COX2	H2Y4S7_CIOSA	ENSCSAVP00000020156	ENSCSAVP00000000325	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein.	0.996
COX2	H2YC00_CIOSA	ENSCSAVP00000020156	ENSCSAVP00000002848	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	BZIP domain-containing protein.	0.793
COX2	H2YC01_CIOSA	ENSCSAVP00000020156	ENSCSAVP00000002849	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	BZIP domain-containing protein.	0.793
COX2	H2YIF7_CIOSA	ENSCSAVP00000020156	ENSCSAVP00000005106	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	DUF4706 domain-containing protein.	0.993
COX2	H2YXN0_CIOSA	ENSCSAVP00000020156	ENSCSAVP00000010091	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein.	0.798
COX2	H2ZJ84_CIOSA	ENSCSAVP00000020156	ENSCSAVP00000017650	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.995
COX3	COX2	ENSCSAVP00000020160	ENSCSAVP00000020156	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.999
COX3	H2Y4S7_CIOSA	ENSCSAVP00000020160	ENSCSAVP00000000325	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Uncharacterized protein.	0.991
COX3	H2YC00_CIOSA	ENSCSAVP00000020160	ENSCSAVP00000002848	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	BZIP domain-containing protein.	0.742
COX3	H2YC01_CIOSA	ENSCSAVP00000020160	ENSCSAVP00000002849	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	BZIP domain-containing protein.	0.742
COX3	H2YIF7_CIOSA	ENSCSAVP00000020160	ENSCSAVP00000005106	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	DUF4706 domain-containing protein.	0.993
COX3	H2YXN0_CIOSA	ENSCSAVP00000020160	ENSCSAVP00000010091	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Uncharacterized protein.	0.793
COX3	H2ZJ84_CIOSA	ENSCSAVP00000020160	ENSCSAVP00000017650	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.	0.996
H2Y4S7_CIOSA	COX2	ENSCSAVP00000000325	ENSCSAVP00000020156	Uncharacterized protein.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.996
H2Y4S7_CIOSA	COX3	ENSCSAVP00000000325	ENSCSAVP00000020160	Uncharacterized protein.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.991
H2Y4S7_CIOSA	H2YC00_CIOSA	ENSCSAVP00000000325	ENSCSAVP00000002848	Uncharacterized protein.	BZIP domain-containing protein.	0.911
H2Y4S7_CIOSA	H2YC01_CIOSA	ENSCSAVP00000000325	ENSCSAVP00000002849	Uncharacterized protein.	BZIP domain-containing protein.	0.911
H2Y4S7_CIOSA	H2YIF7_CIOSA	ENSCSAVP00000000325	ENSCSAVP00000005106	Uncharacterized protein.	DUF4706 domain-containing protein.	0.999
H2Y4S7_CIOSA	H2YXN0_CIOSA	ENSCSAVP00000000325	ENSCSAVP00000010091	Uncharacterized protein.	Uncharacterized protein.	0.836