STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2YZJ0_CIOSAB box-type domain-containing protein. (255 aa)    
Predicted Functional Partners:
H2Z480_CIOSA
Uncharacterized protein.
    
 0.814
H2YAB2_CIOSA
Ubiquitin-like domain-containing protein.
    
 0.806
H2Z0G6_CIOSA
Mothers against decapentaplegic homolog.
    
 0.793
H2YRK1_CIOSA
Mothers against decapentaplegic homolog.
    
 0.755
H2YRY3_CIOSA
Mothers against decapentaplegic homolog.
    
 0.755
H2Y9I4_CIOSA
AN1-type domain-containing protein.
    
 0.753
H2ZIL5_CIOSA
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.725
H2YU99_CIOSA
Uncharacterized protein; Belongs to the argonaute family.
    
 0.714
H2YUW4_CIOSA
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.714
H2YCB9_CIOSA
Uncharacterized protein.
   
 0.709
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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