Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2Z231_CIOSAPKS_ER domain-containing protein. (366 aa)    
Predicted Functional Partners:
H2ZGG2_CIOSA
Mago-bind domain-containing protein.
    
   0.927
H2Y7P5_CIOSA
Uncharacterized protein.
   
  
 0.770
H2YE87_CIOSA
Ribosomal_L30 domain-containing protein.
      
 0.722
H2YZ77_CIOSA
SCP2 domain-containing protein.
  
 0.709
H2Y729_CIOSA
Phosphotransferase.
   
 0.702
H2YR53_CIOSA
Phosphotransferase.
   
 0.702
H2ZPF4_CIOSA
Phosphotransferase.
   
 0.702
H2YNW0_CIOSA
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
      
 0.693
H2ZLT4_CIOSA
Uncharacterized protein.
   
   0.692
H2Z2A8_CIOSA
Carrier domain-containing protein.
   
 0.669
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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