STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2Z5E1_CIOSAATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (587 aa)    
Predicted Functional Partners:
H2Y8I4_CIOSA
NADPH:adrenodoxin oxidoreductase, mitochondrial.
   
 
  0.772
H2Z3Y4_CIOSA
Uncharacterized protein.
    
 0.755
H2ZQK6_CIOSA
Beta_elim_lyase domain-containing protein.
    
  0.745
H2ZL41_CIOSA
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.741
H2Y503_CIOSA
Glutamine synthetase.
     
 0.740
H2YX78_CIOSA
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
    
  0.737
H2ZHZ6_CIOSA
HRDC domain-containing protein.
 
  
 0.714
H2ZRA0_CIOSA
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.702
H2YBQ8_CIOSA
Protein kinase domain-containing protein.
   
  0.663
H2Y7H0_CIOSA
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.638
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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