STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZGR5_CIOSAUncharacterized protein. (320 aa)    
Predicted Functional Partners:
H2YIE8_CIOSA
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.975
H2YQQ0_CIOSA
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.973
H2YM97_CIOSA
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.972
H2Z9R5_CIOSA
Tudor domain-containing protein.
    
 0.970
H2Z5A5_CIOSA
Sm domain-containing protein.
    
  0.966
H2YKQ5_CIOSA
Small nuclear ribonucleoprotein Sm D2.
    
 0.965
H2YQ89_CIOSA
Uncharacterized protein.
    
 0.932
H2Y9W9_CIOSA
Uncharacterized protein.
    
 0.926
H2YVE0_CIOSA
WD_REPEATS_REGION domain-containing protein.
    
 0.922
H2YBB7_CIOSA
WD_REPEATS_REGION domain-containing protein.
    
 
 0.827
Your Current Organism:
Ciona savignyi
NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.