Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADD79420.1 | ADD79797.1 | RIEPE_0509 | RIEPE_0425 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.409 |
| ADD79635.1 | ADD79797.1 | RIEPE_0539 | RIEPE_0425 | Htpg; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.998 |
| ADD79797.1 | ADD79420.1 | RIEPE_0425 | RIEPE_0509 | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.409 |
| ADD79797.1 | ADD79635.1 | RIEPE_0425 | RIEPE_0539 | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | Htpg; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. | 0.998 |
| ADD79797.1 | def | RIEPE_0425 | RIEPE_0422 | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.435 |
| ADD79797.1 | fmt | RIEPE_0425 | RIEPE_0423 | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.535 |
| ADD79797.1 | nusB | RIEPE_0425 | RIEPE_0176 | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.400 |
| def | ADD79797.1 | RIEPE_0422 | RIEPE_0425 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.435 |
| def | fmt | RIEPE_0422 | RIEPE_0423 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.948 |
| fmt | ADD79797.1 | RIEPE_0423 | RIEPE_0425 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.535 |
| fmt | def | RIEPE_0423 | RIEPE_0422 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.948 |
| fmt | nusB | RIEPE_0423 | RIEPE_0176 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.862 |
| nusB | ADD79797.1 | RIEPE_0176 | RIEPE_0425 | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Trk system potassium uptake protein TrkA (K(+)-uptake protein trkA); Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.400 |
| nusB | fmt | RIEPE_0176 | RIEPE_0423 | Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.862 |