Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACR76935.1Hypothetical protein; Unknown cell location. (55 aa)    
Predicted Functional Partners:
ACR76934.1
Hypothetical protein; Unknown cell location.
       0.727
ACR76936.1
Hypothetical protein; CytoplasmicMembrane, score:9.99; NOG34966 non supervised orthologous group.
       0.476
ACR76937.1
Unknown cell location; COG3279 Response regulator of the LytR/AlgR family; KEGG:K07705 two-component response regulator; HMMPfam:IPR001789; HMMPfam:IPR007492; BlastProDom:IPR001789; HMMSmart:IPR001789; superfamily:IPR011006.
       0.476
Your Current Organism:
Eubacterium rectale
NCBI taxonomy Id: 515619
Other names: Agathobacter rectalis ATCC 33656, Eubacterium rectale ATCC 33656, [. rectale ATCC 33656, [Eubacterium] rectale ATCC 33656
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