STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmHS-adenosyl-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (315 aa)    
Predicted Functional Partners:
mraZ
MraZ protein; Psort-B: Cytoplasmic, score:8.87; COG2001 Uncharacterized protein conserved in bacteria; HMMPfam:IPR003444; BlastProDom:IPR003444; HMMTigr:IPR003444; K03925 MraZ protein; Belongs to the MraZ family.
  
 0.996
ACR71735.1
Hypothetical protein; Psort-B: Cytoplasmic, score:8.87.
       0.820
ACR71736.1
Peptidoglycan glycosyltransferase; Psort-B: CytoplasmicMembrane, score:9.82; COG0768 Cell division protein FtsI/penicillin-binding protein 2; HMMPfam:IPR001460; HMMPfam:IPR005311; superfamily:IPR005311; superfamily:IPR012338; K05364 peptidoglycan glycosyltransferase.
 
  
 0.798
rpsI
Psort-B: Cytoplasmic, score:8.87; COG0103 Ribosomal protein S9; HMMPfam:IPR000754; BlastProDom:IPR000754; Gene3D:IPR014721; HMMPanther:IPR000754; ScanRegExp:IPR000754; K02996 small subunit ribosomal protein S9.
   
 
 0.795
rpsF
Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.780
rpsP
Psort-B: Cytoplasmic, score:8.87; COG0228 Ribosomal protein S16; HMMPfam:IPR000307; BlastProDom:IPR000307; Gene3D:IPR000307; HMMPanther:IPR000307; HMMTigr:IPR000307; superfamily:IPR000307; K02959 small subunit ribosomal protein S16.
   
   0.771
rpsJ
Small subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.731
rpsE
Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.727
rpsO
Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.721
rpsL
Small subunit ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.711
Your Current Organism:
Eubacterium eligens
NCBI taxonomy Id: 515620
Other names: Eubacterium eligens ATCC 27750, [. eligens ATCC 27750, [Eubacterium] eligens ATCC 27750
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.