STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein RecO (recombination protein O); Involved in DNA repair and RecF pathway recombination. (247 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
 
 0.965
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.912
ACR71972.1
Psort-B: Cytoplasmic, score:9.98; COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; HMMPfam:IPR003714; K06217 phosphate starvation-inducible protein PhoH and related proteins.
  
    0.801
ACR72353.1
Hypothetical protein; Psort-B: Unknown cell location; COG1026 Predicted Zn-dependent peptidases, insulinase-like; HMMPfam:IPR007863; HMMPfam:IPR013578; Gene3D:IPR011237; ScanRegExp:IPR000572; superfamily:IPR011249.
       0.746
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.721
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
    
 
 0.645
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
  
 0.603
dnaX
DNA polymerase; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 
 0.596
ACR72122.1
Competence/damage-inducible protein CinA; Psort-B: Unknown cell location; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; HMMPfam:IPR008136; HMMTigr:IPR008136; K03742 competence/damage-inducible protein CinA N-terminal domain K03743 competence/damage-inducible protein CinA C-terminal domain.
     
 0.595
dnaK
2-alkenal reductase; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.588
Your Current Organism:
Eubacterium eligens
NCBI taxonomy Id: 515620
Other names: Eubacterium eligens ATCC 27750, [. eligens ATCC 27750, [Eubacterium] eligens ATCC 27750
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