Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cheWChemotaxis protein CheW. (299 aa)    
Predicted Functional Partners:
mcpA
Methyl-accepting chemotaxis protein McpA.
 
 0.998
cheA
Chemotaxis histidine kinase CheA.
 
 0.998
mcpK
Methyl-accepting chemotaxis protein McpK.
 
 0.995
mcpC
Methyl-accepting chemotaxis protein McpC.
 
 0.991
mcpL
Methyl-accepting chemotaxis protein McpL.
 
 0.991
mcpN
Methyl-accepting chemotaxis protein McpN.
 
 0.990
mcpE
Methyl-accepting chemotaxis protein McpE.
 
 0.990
mcpG
Methyl-accepting chemotaxis protein McpG.
 
 0.990
mcpF
Methyl-accepting chemotaxis protein McpF.
 
 0.990
mcpB
Methyl-accepting chemotaxis protein McpB.
 
 0.990
Your Current Organism:
Butyrivibrio proteoclasticus
NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316
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