STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bpr_I1548Hypothetical protein; Belongs to the UPF0102 family. (121 aa)    
Predicted Functional Partners:
bpr_I1547
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.819
lepB3
Signal peptidase I LepB3; Belongs to the peptidase S26 family.
  
    0.744
bpr_I2012
Mg chelatase-like protein.
 
  
 0.736
bpr_I1549
FlhB domain-containing protein.
       0.718
rnhB
Ribonuclease HII RnhB; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.718
bpr_I1553
GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.669
bpr_I1550
Hypothetical protein.
  
    0.656
bpr_I2591
comF family protein.
 
    0.638
rplS
Ribosomal protein L19 RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.619
dprA
DNA protecting protein DprA.
 
    0.619
Your Current Organism:
Butyrivibrio proteoclasticus
NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.