Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
bpr_I1663Archaeal ATPase family protein. (458 aa)    
Predicted Functional Partners:
topB1
DNA topoisomerase III TopB1.
 
     0.822
bpr_I1661
Acetyltransferase.
       0.732
ADL35763.1
Hypothetical protein.
  
     0.644
asd
Aspartate-semialdehyde dehydrogenase Asd; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.519
bpr_I0669
Hypothetical protein.
  
     0.447
bpr_I1660
Hypothetical protein.
       0.436
argH
Argininosuccinate lyase ArgH.
       0.421
Your Current Organism:
Butyrivibrio proteoclasticus
NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316
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