Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
man2ABeta-mannosidase Man2A. (824 aa)    
Predicted Functional Partners:
bga35B
Beta-galactosidase Bga35B; Belongs to the glycosyl hydrolase 35 family.
 
 
 0.652
man38A
Alpha-mannosidase Man38A.
 
   
 0.628
xyl3A
Beta-xylosidase Xyl3A.
 
   
 0.568
ADL35922.1
Hypothetical protein.
       0.535
bgl3E
Beta-glucosidase Bgl3E; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.533
ADL35924.1
HTH domain-containing protein.
       0.497
bpr_I2350
Aminoglycoside phosphotransferase.
  
     0.489
aga27A
Alpha-galactosidase Aga27A.
 
  
 0.487
arf51B
alpha-L-arabinofuranosidase Arf51B.
 
   
 0.480
bga35A
Beta-galactosidase Bga35A; Belongs to the glycosyl hydrolase 35 family.
 
 
 0.453
Your Current Organism:
Butyrivibrio proteoclasticus
NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316
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