STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtur_0124PFAM: isochorismatase hydrolase; KEGG: dth:DICTH_1851 isochorismatase. (180 aa)    
Predicted Functional Partners:
Dtur_0123
PFAM: Quinolinate phosphoribosyl transferase; Nicotinate phosphoribosyltransferase-like; KEGG: dth:DICTH_1850 nicotinate-nucleotide pyrophosphorylase; Belongs to the NAPRTase family.
  
 0.975
Dtur_0125
Hypothetical protein.
       0.655
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.615
uppP
Bacitracin resistance protein BacA; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.572
rpmH
PFAM: ribosomal protein L34; KEGG: dth:DICTH_1849 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
    0.571
Dtur_0126
PFAM: protein of unknown function UPF0047; KEGG: dth:DICTH_1852 hypothetical protein.
  
    0.571
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.558
Dtur_0118
PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: dth:DICTH_1845 conserved protein, JAG-family.
       0.558
Dtur_0119
PFAM: 60 kDa inner membrane insertion protein; KEGG: dth:DICTH_1846 sporulation associated-membrane protein.
       0.558
Dtur_0120
Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.558
Your Current Organism:
Dictyoglomus turgidum
NCBI taxonomy Id: 515635
Other names: D. turgidum DSM 6724, Dictyoglomus turgidum DSM 6724, Dictyoglomus turgidum str. DSM 6724, Dictyoglomus turgidum strain DSM 6724
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