STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtur_0251PFAM: periplasmic binding protein; KEGG: dth:DICTH_1974 ABC-type Fe3+-siderophores transport system, periplasmic component. (369 aa)    
Predicted Functional Partners:
Dtur_0250
PFAM: transport system permease protein; KEGG: dth:DICTH_1973 ABC-type cobalamin/Fe3+-siderophores transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.990
Dtur_0249
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dth:DICTH_1972 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component.
 
 
 0.987
Dtur_1431
PFAM: transport system permease protein; KEGG: dth:DICTH_1326 heme/hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.925
Dtur_0248
PFAM: protein of unknown function UPF0066; formylmethanofuran dehydrogenase subunit E region; KEGG: dth:DICTH_1969 formylmethanofuran dehydrogenase subunit E.
 
    0.871
Dtur_1432
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dth:DICTH_1328 ferrichrome ABC transporter ATP-binding protein.
 
 
 0.862
Dtur_0252
Putative PAS/PAC sensor protein; PFAM: response regulator receiver; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: dth:DICTH_1976 response regulator receiver sensor signal transduction histidine kinase.
  
  
 0.565
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: dth:DICTH_0999 histidine biosynthesis bifunctional protein hisIE; In the N-terminal section; belongs to the PRA-CH family.
   
   0.401
Your Current Organism:
Dictyoglomus turgidum
NCBI taxonomy Id: 515635
Other names: D. turgidum DSM 6724, Dictyoglomus turgidum DSM 6724, Dictyoglomus turgidum str. DSM 6724, Dictyoglomus turgidum strain DSM 6724
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