STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtur_0701PFAM: Circadian clock protein KaiC central region; KEGG: dth:DICTH_0540 RecA-superfamily ATPases implicated in signal transduction. (303 aa)    
Predicted Functional Partners:
Dtur_0702
KEGG: dth:DICTH_0541 hypothetical protein.
       0.794
rgy
Reverse gyrase; Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication; In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family.
 
     0.785
Dtur_0703
TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function Met10; (Uracil-5)-methyltransferase; KEGG: dth:DICTH_0542 23S rRNA (uracil-5-)-methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.773
Dtur_0704
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: dth:DICTH_0543 methanol dehydrogenase regulatory protein.
     
 0.609
Dtur_0708
Ribonuclease HII/HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
 
     0.597
Dtur_1583
PFAM: protein of unknown function DUF265; KEGG: dth:DICTH_1472 hypothetical protein.
  
   
 0.579
Dtur_0705
PFAM: protein of unknown function DUF58; KEGG: dth:DICTH_0544 hypothetical protein.
       0.575
Dtur_0706
KEGG: dth:DICTH_0545 hypothetical protein.
       0.575
Dtur_0707
YdaE; KEGG: dth:DICTH_0546 YdaE.
       0.537
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
       0.504
Your Current Organism:
Dictyoglomus turgidum
NCBI taxonomy Id: 515635
Other names: D. turgidum DSM 6724, Dictyoglomus turgidum DSM 6724, Dictyoglomus turgidum str. DSM 6724, Dictyoglomus turgidum strain DSM 6724
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