STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dtur_1689YpdC; KEGG: dth:DICTH_1581 YpdC. (224 aa)    
Predicted Functional Partners:
Dtur_1690
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dth:DICTH_1582 haloacid dehalogenase domain protein.
       0.774
Dtur_1691
KEGG: dth:DICTH_1583 hypothetical protein.
       0.618
Dtur_1688
Metal dependent phosphohydrolase; KEGG: dth:DICTH_1580 putative response regulator; TIGRFAM: metal dependent phophohydrolase; PFAM: extracellular solute-binding protein family 3; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.552
Dtur_1686
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dth:DICTH_1578 NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit.
       0.419
Dtur_1687
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: dth:DICTH_1579 NADH-quinone oxidoreductase chain E.
       0.419
Your Current Organism:
Dictyoglomus turgidum
NCBI taxonomy Id: 515635
Other names: D. turgidum DSM 6724, Dictyoglomus turgidum DSM 6724, Dictyoglomus turgidum str. DSM 6724, Dictyoglomus turgidum strain DSM 6724
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