STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PODANS_1_675Small nuclear ribonucleoprotein G. (85 aa)    
Predicted Functional Partners:
PODANS_1_8350
Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 1.
   
 0.999
PODANS_1_22980
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
PODANS_1_19150
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.999
PODANS_7_3200
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
PODANS_6_5050
Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 2.
   
 0.999
PODANS_7_7800
Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1.
   
 0.998
PODANS_6_1810
Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 2.
   
 0.998
PODANS_2_9040
Small nuclear ribonucleoprotein Sm D3.
   
 0.998
A0A090D412
Putative U5 snRNP component.
   
 0.997
PODANS_1_7200
Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 1.
   
 0.997
Your Current Organism:
Podospora anserina
NCBI taxonomy Id: 515849
Other names: P. anserina S mat+, Podospora anserina FGSC #10383, Podospora anserina S mat+
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