STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PODANS_5_7095Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 8. (472 aa)    
Predicted Functional Partners:
PODANS_1_13930
Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 3.
   
  0.595
PODANS_4_1700
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.540
PODANS_5_4110
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.536
A0A090DCC9
Putative DNA-directed RNA polymerases I, II, and III subunit.
    
 0.523
PODANS_3_3870
Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 2.
    
 0.523
PODANS_6_7080
Putative DNA-directed RNA polymerases I, II, and III subunit RPABC.
    
 0.523
A0A090C9W0
Putative DNA-directed RNA polymerase II subunit RPB4.
    
 0.522
PODANS_1_2560
Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 1.
    
 0.522
PODANS_3_9390
Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 2.
    
 0.522
PODANS_7_3840
Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.520
Your Current Organism:
Podospora anserina
NCBI taxonomy Id: 515849
Other names: P. anserina S mat+, Podospora anserina FGSC #10383, Podospora anserina S mat+
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