STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT73950.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
SIT73956.1
Hypothetical protein.
 
   
 0.799
SIT82629.1
Flagellar motor switch protein FliM.
  
     0.716
SIT82516.1
Hypothetical protein.
  
     0.705
SIT76796.1
Hypothetical protein.
  
     0.704
SIT79497.1
Protein of unknown function.
  
     0.672
SIT82191.1
Hypothetical protein.
  
     0.672
SIT77628.1
Hypothetical protein.
  
     0.664
SIT75060.1
Hypothetical protein.
  
     0.663
SIT76728.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.641
SIT82842.1
Regulatory protein, luxR family.
  
     0.635
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.