STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT78305.1Putative signal transducing protein. (71 aa)    
Predicted Functional Partners:
SIT78299.1
tRNA1(Val) A37 N6-methylase TrmN6; Belongs to the methyltransferase superfamily.
       0.839
SIT78294.1
Hypothetical protein.
 
     0.792
SIT78309.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.731
SIT81390.1
N-terminal double-transmembrane domain-containing protein.
  
     0.554
SIT78247.1
TIGR02302 family protein.
 
     0.487
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.432
SIT83052.1
Tellurite resistance protein TerB.
  
     0.415
SIT82178.1
Protein of unknown function.
  
     0.412
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.