STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT78564.15-bromo-4-chloroindolyl phosphate hydrolysis protein. (292 aa)    
Predicted Functional Partners:
SIT78568.1
Uncharacterized conserved protein YaaN involved in tellurite resistance; Belongs to the TelA family.
 
  
 0.991
SIT78577.1
Protein of unknown function.
 
     0.926
SIT78552.1
23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.
     
 0.902
SIT78581.1
Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain.
 
     0.892
SIT78589.1
Hypothetical protein.
 
     0.848
SIT78559.1
Hypothetical protein.
       0.773
SIT81606.1
Hypothetical protein.
  
     0.735
SIT74125.1
Hypothetical protein.
  
     0.699
tadA
tRNA(Arg) A34 adenosine deaminase TadA; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.660
SIT82354.1
Phasin protein.
  
     0.635
Your Current Organism:
Pontibaca methylaminivorans
NCBI taxonomy Id: 515897
Other names: DSM 21219, KCTC 22497, P. methylaminivorans, Pontibaca methylaminivorans Kim et al. 2010, alpha proteobacterium GRP21, alpha proteobacterium PH34, strain GRP21
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